PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g01830
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family AP2
Protein Properties Length: 500aa    MW: 56561.2 Da    PI: 7.3396
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g01830genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-17157206155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  CA02g01830 157 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 206
                 78*******************......55************************997 PP

2AP244.44.1e-14249299155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV+ +k  grW+A+       g    +k+++lg f+t++eAa+a+++a+ k +g
  CA02g01830 249 SKYRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDTENEAARAYDKAAIKCNG 299
                 89********.7******...5...334336**********************99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.8E-9157206IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-16157215IPR016177DNA-binding domain
SMARTSM003807.5E-32158220IPR001471AP2/ERF domain
PROSITE profilePS5103217.596158214IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-17158214IPR001471AP2/ERF domain
CDDcd000182.44E-11158213No hitNo description
CDDcd000182.55E-26249309No hitNo description
SuperFamilySSF541712.16E-17249309IPR016177DNA-binding domain
PfamPF008475.7E-10249299IPR001471AP2/ERF domain
SMARTSM003802.0E-32250313IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-16250307IPR001471AP2/ERF domain
PROSITE profilePS5103216.015250307IPR001471AP2/ERF domain
PRINTSPR003676.1E-6251262IPR001471AP2/ERF domain
PRINTSPR003676.1E-6289309IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MWNLNNSPDH RRDDGSEEGK GVGSVSNSSS SAVEELYGSE EEDNDQAEEN GEIKGKKKRS  60
TPSKIFGFSM TAPTNNDNLS SENVAPVTRQ FFPVDESENN GTENFEGDDR SCILPRAHWA  120
GVKFYQPEPS GVYQLSQQQL PVQPMKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK  180
QVYLGGFDTA HAAARAYDRA AIKFRGVEAD INFNLEDYEE DLKQMKNLTK EEFVHVLRRQ  240
STGFPRGSSK YRGVTLHKCG RWEARMGQLL GKKYVYLGLF DTENEAARAY DKAAIKCNGK  300
DAVTNFDPSI YENELYSTES TNKAADHSLD LSLGSSSSKQ SRRETEHTYK DQNSSSMQFN  360
VDWPHQGSRP KQSSPIDMDG RRRNVYNETE TLQLLSQTHL HSPGSFKPNS NEMQRFGQYM  420
RAGDSQMFPP QFTSSNYQVQ FPSSSNRRDQ WQINNVLPPH PTSTICNCCS IIRIPSADIK  480
TSKLVSEEWL PYSLTGPSN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5869520.0HQ586952.1 Solanum lycopersicum AP2 transcription factor SlAP2b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001233908.20.0AP2 transcription factor SlAP2b
RefseqXP_010315852.10.0PREDICTED: AP2 transcription factor SlAP2b isoform X1
SwissprotP479271e-114AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLK4B6T10.0K4B6T1_SOLLC; Uncharacterized protein
STRINGSolyc02g064960.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20192365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-108AP2 family protein